J3_8CDU_006
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 8CDU|1|A|U|1192
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDU_006 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.2266
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_40706.1
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CDU|1|A|U|1126
8CDU|1|A|G|1127
8CDU|1|A|A|1128
*
8CDU|1|A|U|1164
8CDU|1|A|G|1165
8CDU|1|A|A|1166
8CDU|1|A|C|1167
8CDU|1|A|U|1168
8CDU|1|A|G|1169
8CDU|1|A|C|1170
*
8CDU|1|A|G|1184
8CDU|1|A|A|1185
8CDU|1|A|G|1186
8CDU|1|A|G|1187
8CDU|1|A|A|1188
8CDU|1|A|A|1189
8CDU|1|A|G|1190
8CDU|1|A|G|1191
8CDU|1|A|U|1192
8CDU|1|A|G|1193
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Ribonuclease R
- Chain D
- 30S ribosomal protein S2
- Chain H
- 30S ribosomal protein S7
- Chain J
- 30S ribosomal protein S9
- Chain K
- 30S ribosomal protein S10
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