J3_8CDU_010
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*CACCAGUGG*CGA
- Length
- 14 nucleotides
- Bulged bases
- 8CDU|1|A|A|727, 8CDU|1|A|U|732
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDU_010 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.2516
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CDU|1|A|U|681
8CDU|1|A|G|682
*
8CDU|1|A|C|726
8CDU|1|A|A|727
8CDU|1|A|C|728
8CDU|1|A|C|729
8CDU|1|A|A|730
8CDU|1|A|G|731
8CDU|1|A|U|732
8CDU|1|A|G|733
8CDU|1|A|G|734
*
8CDU|1|A|C|741
8CDU|1|A|G|742
8CDU|1|A|A|743
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain O
- 30S ribosomal protein S15
- Chain T
- 30S ribosomal protein S6
- Chain U
- 30S ribosomal protein S18
- Chain V
- 30S ribosomal protein S11
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