J3_8CEH_028

3D structure

PDB id

8CEH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.05 Å

Loop

Sequence

UAG*CGUA(OMG)*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CEH_028 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1171

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8CEH|1|AA|U|829
8CEH|1|AA|A|830
8CEH|1|AA|G|831
*
8CEH|1|AA|C|863
8CEH|1|AA|G|864
8CEH|1|AA|U|865
8CEH|1|AA|A|866
8CEH|1|AA|OMG|867
*
8CEH|1|AA|U|892
8CEH|1|AA|C|893
8CEH|1|AA|G|894
8CEH|1|AA|A|895

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain EE

60S ribosomal protein L2-A

Chain S

60S ribosomal protein L34-A