3D structure

PDB id
8CF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
1.82 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CF1_002 not in the Motif Atlas
Homologous match to J3_4LFB_003
Geometric discrepancy: 0.0622
The information below is about J3_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_52655.4
Basepair signature
cWW-tSH-cWW-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

8CF1|1|A|U|943
8CF1|1|A|G|944
8CF1|1|A|G|945
8CF1|1|A|A|946
*
8CF1|1|A|U|1235
8CF1|1|A|A|1236
8CF1|1|A|C|1237
*
8CF1|1|A|G|1337
8CF1|1|A|G|1338
8CF1|1|A|A|1339
8CF1|1|A|A|1340

Current chains

Chain A
16S rRNA

Nearby chains

Chain I
Small ribosomal subunit protein uS9
Chain M
Small ribosomal subunit protein uS13

Coloring options:


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