J3_8CF1_002
3D structure
- PDB id
- 8CF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracycline bound to the 30S head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CF1_002 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.0622
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CF1|1|A|U|943
8CF1|1|A|G|944
8CF1|1|A|G|945
8CF1|1|A|A|946
*
8CF1|1|A|U|1235
8CF1|1|A|A|1236
8CF1|1|A|C|1237
*
8CF1|1|A|G|1337
8CF1|1|A|G|1338
8CF1|1|A|A|1339
8CF1|1|A|A|1340
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS9
- Chain M
- Small ribosomal subunit protein uS13
Coloring options: