J3_8CF1_005
3D structure
- PDB id
- 8CF1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Tetracycline bound to the 30S head
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.82 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CF1_005 not in the Motif Atlas
- Homologous match to J3_5J7L_008
- Geometric discrepancy: 0.0672
- The information below is about J3_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.3
- Basepair signature
- cWW-tSS-F-F-tWH-F-F-cWW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8CF1|1|A|C|1063
8CF1|1|A|G|1064
8CF1|1|A|U|1065
8CF1|1|A|C|1066
8CF1|1|A|A|1067
8CF1|1|A|G|1068
*
8CF1|1|A|C|1107
8CF1|1|A|G|1108
8CF1|1|A|C|1109
8CF1|1|A|A|1110
8CF1|1|A|A|1111
8CF1|1|A|C|1112
8CF1|1|A|C|1113
*
8CF1|1|A|G|1187
8CF1|1|A|A|1188
8CF1|1|A|U|1189
8CF1|1|A|G|1190
8CF1|1|A|A|1191
8CF1|1|A|C|1192
8CF1|1|A|G|1193
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain C
- Small ribosomal subunit protein uS3
- Chain E
- Small ribosomal subunit protein uS5
- Chain G
- 30S ribosomal protein S7
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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