3D structure

PDB id
8CF1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
1.82 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
8CF1|1|A|U|1240, 8CF1|1|A|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CF1_007 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1254
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8CF1|1|A|C|1237
8CF1|1|A|A|1238
8CF1|1|A|A|1239
8CF1|1|A|U|1240
8CF1|1|A|G|1241
*
8CF1|1|A|C|1296
8CF1|1|A|G|1297
8CF1|1|A|U|1298
8CF1|1|A|A|1299
8CF1|1|A|G|1300
8CF1|1|A|U|1301
8CF1|1|A|C|1302
8CF1|1|A|C|1303
*
8CF1|1|A|G|1334
8CF1|1|A|U|1335
8CF1|1|A|C|1336
8CF1|1|A|G|1337

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
Small ribosomal subunit protein uS13

Coloring options:


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