3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
UAG*CGUA(OMG)*UCGA
Length
12 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CF5_029 not in the Motif Atlas
Homologous match to J3_8C3A_004
Geometric discrepancy: 0.1138
The information below is about J3_8C3A_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.5
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

8CF5|1|AA|U|829
8CF5|1|AA|A|830
8CF5|1|AA|G|831
*
8CF5|1|AA|C|863
8CF5|1|AA|G|864
8CF5|1|AA|U|865
8CF5|1|AA|A|866
8CF5|1|AA|OMG|867
*
8CF5|1|AA|U|892
8CF5|1|AA|C|893
8CF5|1|AA|G|894
8CF5|1|AA|A|895

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L19-A
Chain EE
60S ribosomal protein L2-A
Chain S
60S ribosomal protein L34-A
Chain b
60S ribosomal protein L43-A

Coloring options:


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