J3_8CF5_029
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UAG*CGUA(OMG)*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CF5_029 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.1138
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8CF5|1|AA|U|829
8CF5|1|AA|A|830
8CF5|1|AA|G|831
*
8CF5|1|AA|C|863
8CF5|1|AA|G|864
8CF5|1|AA|U|865
8CF5|1|AA|A|866
8CF5|1|AA|OMG|867
*
8CF5|1|AA|U|892
8CF5|1|AA|C|893
8CF5|1|AA|G|894
8CF5|1|AA|A|895
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L19-A
- Chain EE
- 60S ribosomal protein L2-A
- Chain S
- 60S ribosomal protein L34-A
- Chain b
- 60S ribosomal protein L43-A
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