J3_8CF5_043

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CF5_043 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1026

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8CF5|1|c|U|1293
8CF5|1|c|G|1294
*
8CF5|1|c|U|1303
8CF5|1|c|G|1304
8CF5|1|c|U|1305
8CF5|1|c|C|1306
*
8CF5|1|c|G|1318
8CF5|1|c|A|1319
8CF5|1|c|U|1320
8CF5|1|c|A|1321
8CF5|1|c|A|1322

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain d

40S ribosomal protein S0-A

Chain f

40S ribosomal protein S2

Chain t

40S ribosomal protein S17-A