3D structure

PDB id
8CF8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eravacycline bound to the 30S head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.2 Å

Loop

Sequence
UG*UGUU*GCAA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CF8_012 not in the Motif Atlas
Homologous match to J3_4LFB_017
Geometric discrepancy: 0.0843
The information below is about J3_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_79369.1
Basepair signature
cWW-cWW-tSS-F-F-cWW-F
Number of instances in this motif group
1

Unit IDs

8CF8|1|A|U|1073
8CF8|1|A|G|1074
*
8CF8|1|A|U|1083
8CF8|1|A|G|1084
8CF8|1|A|U|1085
8CF8|1|A|U|1086
*
8CF8|1|A|G|1099
8CF8|1|A|C|1100
8CF8|1|A|A|1101
8CF8|1|A|A|1102

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2

Coloring options:


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