J3_8CGD_008
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 8CGD|1|a|U|2833, 8CGD|1|a|A|2835
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CGD_008 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1342
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8CGD|1|a|G|2812
8CGD|1|a|A|2813
8CGD|1|a|A|2814
8CGD|1|a|C|2815
*
8CGD|1|a|G|2831
8CGD|1|a|U|2832
8CGD|1|a|U|2833
8CGD|1|a|G|2834
8CGD|1|a|A|2835
8CGD|1|a|U|2836
*
8CGD|1|a|A|2882
8CGD|1|a|A|2883
8CGD|1|a|U|2884
8CGD|1|a|G|2885
8CGD|1|a|A|2886
8CGD|1|a|A|2887
8CGD|1|a|C|2888
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain m
- Large ribosomal subunit protein bL17
- Chain r
- Large ribosomal subunit protein uL22
- Chain z
- Large ribosomal subunit protein bL32
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