3D structure

PDB id
8CGJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.79 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
8CGJ|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CGJ_006 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.0557
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8CGJ|1|A|U|672
8CGJ|1|A|A|673
*
8CGJ|1|A|U|717
8CGJ|1|A|A|718
8CGJ|1|A|C|719
8CGJ|1|A|C|720
8CGJ|1|A|G|721
8CGJ|1|A|G|722
8CGJ|1|A|U|723
8CGJ|1|A|G|724
8CGJ|1|A|G|725
*
8CGJ|1|A|C|732
8CGJ|1|A|G|733
8CGJ|1|A|G|734

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
Small ribosomal subunit protein bS6, non-modified isoform
Chain K
Small ribosomal subunit protein uS11
Chain O
Small ribosomal subunit protein uS15
Chain R
Small ribosomal subunit protein bS18
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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