J3_8CGK_001

3D structure

PDB id

8CGK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Lincomycin and Avilamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.64 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8CGK|1|a|U|686, 8CGK|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGK_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3161

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8CGK|1|a|U|683
8CGK|1|a|G|684
8CGK|1|a|A|685
8CGK|1|a|U|686
8CGK|1|a|C|687
8CGK|1|a|U|688
8CGK|1|a|A|689
*
8CGK|1|a|U|773
8CGK|1|a|G|774
8CGK|1|a|G|775
*
8CGK|1|a|C|791
8CGK|1|a|A|792
8CGK|1|a|A|793
8CGK|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2