J3_8CGK_010
3D structure
- PDB id
- 8CGK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Lincomycin and Avilamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.64 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8CGK|1|a|A|504, 8CGK|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CGK_010 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0856
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_92134.2
- Basepair signature
- cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CGK|1|a|G|30
8CGK|1|a|C|31
*
8CGK|1|a|G|474
8CGK|1|a|C|475
8CGK|1|a|G|476
8CGK|1|a|A|477
8CGK|1|a|A|478
8CGK|1|a|A|479
8CGK|1|a|A|480
8CGK|1|a|G|481
8CGK|1|a|A|482
8CGK|1|a|A|483
8CGK|1|a|C|484
*
8CGK|1|a|G|496
8CGK|1|a|A|497
8CGK|1|a|G|498
8CGK|1|a|U|499
8CGK|1|a|G|500
8CGK|1|a|A|501
8CGK|1|a|A|502
8CGK|1|a|A|503
8CGK|1|a|A|504
8CGK|1|a|A|505
8CGK|1|a|G|506
8CGK|1|a|A|507
8CGK|1|a|A|508
8CGK|1|a|C|509
8CGK|1|a|C|510
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein uL22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: