J3_8CGN_004

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGN_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.2565

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8CGN|1|AA|G|1230
8CGN|1|AA|A|1231
8CGN|1|AA|C|1232
*
8CGN|1|AA|G|1256
8CGN|1|AA|C|1257
8CGN|1|AA|U|1258
8CGN|1|AA|A|1259
8CGN|1|AA|A|1260
8CGN|1|AA|G|1261
8CGN|1|AA|G|1262
*
8CGN|1|AA|C|1277
8CGN|1|AA|A|1278
8CGN|1|AA|C|1279

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain Ee

60S ribosomal protein L12-A