J3_8CGN_031
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CGN_031 not in the Motif Atlas
- Homologous match to J3_8C3A_052
- Geometric discrepancy: 0.0718
- The information below is about J3_8C3A_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8CGN|1|AA|U|1526
8CGN|1|AA|C|1527
8CGN|1|AA|G|1528
8CGN|1|AA|A|1529
8CGN|1|AA|U|1530
8CGN|1|AA|C|1531
*
8CGN|1|AA|G|1591
8CGN|1|AA|G|1592
8CGN|1|AA|A|1593
8CGN|1|AA|A|1594
8CGN|1|AA|U|1595
*
8CGN|1|AA|A|1612
8CGN|1|AA|A|1613
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain J
- 60S ribosomal protein L25
- Chain S
- 60S ribosomal protein L34-A
- Chain W
- 60S ribosomal protein L38
- Chain X
- 60S ribosomal protein L39
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