J3_8CGN_040

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

8CGN|1|c|A|47

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGN_040 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0581

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CGN|1|c|A|41
8CGN|1|c|G|42
8CGN|1|c|A|43
8CGN|1|c|U|44
8CGN|1|c|U|45
8CGN|1|c|A|46
8CGN|1|c|A|47
8CGN|1|c|G|48
*
8CGN|1|c|C|431
8CGN|1|c|G|432
8CGN|1|c|C|433
8CGN|1|c|G|434
8CGN|1|c|C|435
8CGN|1|c|A2M|436
8CGN|1|c|A|437
8CGN|1|c|A|438
8CGN|1|c|U|439
*
8CGN|1|c|A|464
8CGN|1|c|G|465
8CGN|1|c|U|466

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain l

40S ribosomal protein S8-B

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A