J3_8CGN_044
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 8CGN|1|c|U|1390, 8CGN|1|c|U|1413, 8CGN|1|c|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CGN_044 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.1267
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8CGN|1|c|A|1336
8CGN|1|c|A|1337
8CGN|1|c|C|1338
*
8CGN|1|c|G|1386
8CGN|1|c|G|1387
8CGN|1|c|A|1388
8CGN|1|c|C|1389
8CGN|1|c|U|1390
8CGN|1|c|A|1391
*
8CGN|1|c|U|1407
8CGN|1|c|G|1408
8CGN|1|c|G|1409
8CGN|1|c|A|1410
8CGN|1|c|A|1411
8CGN|1|c|G|1412
8CGN|1|c|U|1413
8CGN|1|c|U|1414
8CGN|1|c|U|1415
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 7
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
- Chain t
- 40S ribosomal protein S17-A
- Chain w
- 40S ribosomal protein S20
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