J3_8CIV_003

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UAG*CGUA(OMG)C*GUCGA

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|AA|U|829
8CIV|1|AA|A|830
8CIV|1|AA|G|831
*
8CIV|1|AA|C|863
8CIV|1|AA|G|864
8CIV|1|AA|U|865
8CIV|1|AA|A|866
8CIV|1|AA|OMG|867
8CIV|1|AA|C|868
*
8CIV|1|AA|G|891
8CIV|1|AA|U|892
8CIV|1|AA|C|893
8CIV|1|AA|G|894
8CIV|1|AA|A|895

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain EE

60S ribosomal protein L2-A

Chain S

60S ribosomal protein L34-A

Chain V

60S ribosomal protein L37-A