J3_8CIV_043

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCAGACAC*GUGGGUGG*CUUAGACG

Length

24 nucleotides

Bulged bases

8CIV|1|c|A|1217, 8CIV|1|c|G|1445, 8CIV|1|c|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|c|C|1215
8CIV|1|c|C|1216
8CIV|1|c|A|1217
8CIV|1|c|G|1218
8CIV|1|c|A|1219
8CIV|1|c|C|1220
8CIV|1|c|A|1221
8CIV|1|c|C|1222
*
8CIV|1|c|G|1261
8CIV|1|c|U|1262
8CIV|1|c|G|1263
8CIV|1|c|G|1264
8CIV|1|c|G|1265
8CIV|1|c|U|1266
8CIV|1|c|G|1267
8CIV|1|c|G|1268
*
8CIV|1|c|C|1441
8CIV|1|c|U|1442
8CIV|1|c|U|1443
8CIV|1|c|A|1444
8CIV|1|c|G|1445
8CIV|1|c|A|1446
8CIV|1|c|C|1447
8CIV|1|c|G|1448

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain Aa

Elongation factor 2

Chain n

40S ribosomal protein S10-A