J3_8CKU_013
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8CKU|1|c|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CKU_013 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.0977
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8CKU|1|c|A|881
8CKU|1|c|U|882
8CKU|1|c|C|883
8CKU|1|c|A|884
*
8CKU|1|c|U|928
8CKU|1|c|A|929
8CKU|1|c|A|930
8CKU|1|c|C|931
8CKU|1|c|U|932
8CKU|1|c|A|933
8CKU|1|c|C|934
8CKU|1|c|U|935
8CKU|1|c|G|936
*
8CKU|1|c|C|943
8CKU|1|c|A|944
8CKU|1|c|U|945
8CKU|1|c|U|946
8CKU|1|c|U|947
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain b
- 60S ribosomal protein L43-A
- Chain e
- 40S ribosomal protein S1-A
- Chain p
- 40S ribosomal protein S13
- Chain q
- 40S ribosomal protein S14-A
Coloring options: