J3_8CKU_017
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8CKU|1|c|G|1199, 8CKU|1|c|G|1201, 8CKU|1|c|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CKU_017 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0948
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CKU|1|c|C|1180
8CKU|1|c|U|1181
8CKU|1|c|U|1182
8CKU|1|c|A|1183
8CKU|1|c|A|1184
8CKU|1|c|U|1185
8CKU|1|c|U|1186
8CKU|1|c|U|1187
*
8CKU|1|c|G|1198
8CKU|1|c|G|1199
8CKU|1|c|G|1200
8CKU|1|c|G|1201
8CKU|1|c|A|1202
8CKU|1|c|A|1203
8CKU|1|c|A|1204
8CKU|1|c|C|1205
8CKU|1|c|U|1206
8CKU|1|c|C|1207
8CKU|1|c|A|1208
8CKU|1|c|C|1209
*
8CKU|1|c|G|1454
8CKU|1|c|G|1455
8CKU|1|c|C|1456
8CKU|1|c|C|1457
8CKU|1|c|G|1458
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain Bb
- Transfer RNA; tRNA
- Chain r
- 40S ribosomal protein S15
- Chain u
- 40S ribosomal protein S18-A
- Chain w
- 40S ribosomal protein S20
Coloring options: