J3_8CKU_022
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 8CKU|1|AA|U|117, 8CKU|1|AA|G|120, 8CKU|1|AA|A|121, 8CKU|1|AA|U|147, 8CKU|1|AA|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CKU|1|AA|C|113
8CKU|1|AA|A|114
8CKU|1|AA|A|115
8CKU|1|AA|A|116
8CKU|1|AA|U|117
8CKU|1|AA|U|118
8CKU|1|AA|U|119
8CKU|1|AA|G|120
8CKU|1|AA|A|121
8CKU|1|AA|A|122
8CKU|1|AA|A|123
8CKU|1|AA|U|124
*
8CKU|1|AA|A|144
8CKU|1|AA|G|145
8CKU|1|AA|U|146
8CKU|1|AA|U|147
8CKU|1|AA|G|148
8CKU|1|AA|U|149
8CKU|1|AA|A|150
8CKU|1|AA|A|151
8CKU|1|AA|U|152
8CKU|1|AA|U|153
8CKU|1|AA|U|154
8CKU|1|AA|G|155
8CKU|1|AA|G|156
8CKU|1|AA|A|157
8CKU|1|AA|G|158
*
8CKU|1|AA|C|263
8CKU|1|AA|G|264
8CKU|1|AA|A|265
8CKU|1|AA|A|266
8CKU|1|AA|G|267
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain KK
- 60S ribosomal protein L8-A
- Chain OO
- 60S ribosomal protein L13-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain T
- 60S ribosomal protein L35-A
- Chain U
- 60S ribosomal protein L36-A
Coloring options: