J3_8CKU_042

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGG*UUGUC*GAUAA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CKU|1|c|U|1293
8CKU|1|c|G|1294
8CKU|1|c|G|1295
*
8CKU|1|c|U|1302
8CKU|1|c|U|1303
8CKU|1|c|G|1304
8CKU|1|c|U|1305
8CKU|1|c|C|1306
*
8CKU|1|c|G|1318
8CKU|1|c|A|1319
8CKU|1|c|U|1320
8CKU|1|c|A|1321
8CKU|1|c|A|1322

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain d

40S ribosomal protein S0-A

Chain f

40S ribosomal protein S2

Chain t

40S ribosomal protein S17-A

Chain x

40S ribosomal protein S21-A