J3_8CMJ_007

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

AUUG*CUUAUUC*GAAGACAUU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|A|2432
8CMJ|1|AA|U|2433
8CMJ|1|AA|U|2434
8CMJ|1|AA|G|2435
*
8CMJ|1|AA|C|2512
8CMJ|1|AA|U|2513
8CMJ|1|AA|U|2514
8CMJ|1|AA|A|2515
8CMJ|1|AA|U|2516
8CMJ|1|AA|U|2517
8CMJ|1|AA|C|2518
*
8CMJ|1|AA|G|2589
8CMJ|1|AA|A|2590
8CMJ|1|AA|A|2591
8CMJ|1|AA|G|2592
8CMJ|1|AA|A|2593
8CMJ|1|AA|C|2594
8CMJ|1|AA|A|2595
8CMJ|1|AA|U|2596
8CMJ|1|AA|U|2597

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain KK

60S ribosomal protein L8-A

Chain QQ

60S ribosomal protein L15-A

Chain U

60S ribosomal protein L36-A