J3_8CMJ_008

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

GUC*GCCUAUCGAUCCU*A(OMG)GUGCC

Length

23 nucleotides

Bulged bases

8CMJ|1|AA|C|2797

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|G|2651
8CMJ|1|AA|U|2652
8CMJ|1|AA|C|2653
*
8CMJ|1|AA|G|2754
8CMJ|1|AA|C|2755
8CMJ|1|AA|C|2756
8CMJ|1|AA|U|2757
8CMJ|1|AA|A|2758
8CMJ|1|AA|U|2759
8CMJ|1|AA|C|2760
8CMJ|1|AA|G|2761
8CMJ|1|AA|A|2762
8CMJ|1|AA|U|2763
8CMJ|1|AA|C|2764
8CMJ|1|AA|C|2765
8CMJ|1|AA|U|2766
*
8CMJ|1|AA|A|2792
8CMJ|1|AA|OMG|2793
8CMJ|1|AA|G|2794
8CMJ|1|AA|U|2795
8CMJ|1|AA|G|2796
8CMJ|1|AA|C|2797
8CMJ|1|AA|C|2798

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L18-A

Chain F

60S ribosomal protein L21-A

Chain M

60S ribosomal protein L28

Chain a

60S ribosomal protein L42-A