J3_8CMJ_017
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 8CMJ|1|c|A|1183, 8CMJ|1|c|G|1199, 8CMJ|1|c|G|1201, 8CMJ|1|c|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CMJ|1|c|C|1180
8CMJ|1|c|U|1181
8CMJ|1|c|U|1182
8CMJ|1|c|A|1183
8CMJ|1|c|A|1184
8CMJ|1|c|U|1185
8CMJ|1|c|U|1186
8CMJ|1|c|U|1187
*
8CMJ|1|c|G|1198
8CMJ|1|c|G|1199
8CMJ|1|c|G|1200
8CMJ|1|c|G|1201
8CMJ|1|c|A|1202
8CMJ|1|c|A|1203
8CMJ|1|c|A|1204
8CMJ|1|c|C|1205
8CMJ|1|c|U|1206
8CMJ|1|c|C|1207
8CMJ|1|c|A|1208
8CMJ|1|c|C|1209
*
8CMJ|1|c|G|1454
8CMJ|1|c|G|1455
8CMJ|1|c|C|1456
8CMJ|1|c|C|1457
8CMJ|1|c|G|1458
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain r
- 40S ribosomal protein S15
- Chain u
- 40S ribosomal protein S18-A
- Chain w
- 40S ribosomal protein S20
Coloring options: