3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
Length
32 nucleotides
Bulged bases
8CMJ|1|AA|U|117, 8CMJ|1|AA|G|120, 8CMJ|1|AA|A|121, 8CMJ|1|AA|U|147, 8CMJ|1|AA|G|156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CMJ|1|AA|C|113
8CMJ|1|AA|A|114
8CMJ|1|AA|A|115
8CMJ|1|AA|A|116
8CMJ|1|AA|U|117
8CMJ|1|AA|U|118
8CMJ|1|AA|U|119
8CMJ|1|AA|G|120
8CMJ|1|AA|A|121
8CMJ|1|AA|A|122
8CMJ|1|AA|A|123
8CMJ|1|AA|U|124
*
8CMJ|1|AA|A|144
8CMJ|1|AA|G|145
8CMJ|1|AA|U|146
8CMJ|1|AA|U|147
8CMJ|1|AA|G|148
8CMJ|1|AA|U|149
8CMJ|1|AA|A|150
8CMJ|1|AA|A|151
8CMJ|1|AA|U|152
8CMJ|1|AA|U|153
8CMJ|1|AA|U|154
8CMJ|1|AA|G|155
8CMJ|1|AA|G|156
8CMJ|1|AA|A|157
8CMJ|1|AA|G|158
*
8CMJ|1|AA|C|263
8CMJ|1|AA|G|264
8CMJ|1|AA|A|265
8CMJ|1|AA|A|266
8CMJ|1|AA|G|267

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain CC
5.8S ribosomal RNA; 5.8S rRNA
Chain KK
60S ribosomal protein L8-A
Chain OO
60S ribosomal protein L13-A
Chain QQ
60S ribosomal protein L15-A
Chain T
60S ribosomal protein L35-A
Chain U
60S ribosomal protein L36-A

Coloring options:

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