J3_8CMJ_030
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- CAC*GUAACU*AG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CMJ_030 not in the Motif Atlas
- Homologous match to J3_8P9A_057
- Geometric discrepancy: 0.2707
- The information below is about J3_8P9A_057
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8CMJ|1|AA|C|1631
8CMJ|1|AA|A|1632
8CMJ|1|AA|C|1633
*
8CMJ|1|AA|G|1640
8CMJ|1|AA|U|1641
8CMJ|1|AA|A|1642
8CMJ|1|AA|A|1643
8CMJ|1|AA|C|1644
8CMJ|1|AA|U|1645
*
8CMJ|1|AA|A|1810
8CMJ|1|AA|G|1811
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain L
- 60S ribosomal protein L27-A
- Chain S
- 60S ribosomal protein L34-A
- Chain W
- 60S ribosomal protein L38
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