J3_8CMJ_033

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

AGCUG*CACGUUCUAGCAUUCAAG*UGAU

Length

27 nucleotides

Bulged bases

8CMJ|1|AA|G|2549, 8CMJ|1|AA|U|2550, 8CMJ|1|AA|U|2551, 8CMJ|1|AA|C|2552, 8CMJ|1|AA|U|2553, 8CMJ|1|AA|A|2554, 8CMJ|1|AA|U|2558, 8CMJ|1|AA|U|2559, 8CMJ|1|AA|C|2560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|A|2529
8CMJ|1|AA|G|2530
8CMJ|1|AA|C|2531
8CMJ|1|AA|U|2532
8CMJ|1|AA|G|2533
*
8CMJ|1|AA|C|2546
8CMJ|1|AA|A|2547
8CMJ|1|AA|C|2548
8CMJ|1|AA|G|2549
8CMJ|1|AA|U|2550
8CMJ|1|AA|U|2551
8CMJ|1|AA|C|2552
8CMJ|1|AA|U|2553
8CMJ|1|AA|A|2554
8CMJ|1|AA|G|2555
8CMJ|1|AA|C|2556
8CMJ|1|AA|A|2557
8CMJ|1|AA|U|2558
8CMJ|1|AA|U|2559
8CMJ|1|AA|C|2560
8CMJ|1|AA|A|2561
8CMJ|1|AA|A|2562
8CMJ|1|AA|G|2563
*
8CMJ|1|AA|U|2578
8CMJ|1|AA|G|2579
8CMJ|1|AA|A|2580
8CMJ|1|AA|U|2581

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A

Chain L

60S ribosomal protein L27-A

Chain O

60S ribosomal protein L30

Chain S

60S ribosomal protein L34-A

Chain b

60S ribosomal protein L43-A