3D structure

PDB id
8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.79 Å

Loop

Sequence
CUC*GAAC*GUAAAAG
Length
14 nucleotides
Bulged bases
8CMJ|1|AA|A|2703, 8CMJ|1|AA|A|2705
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8CMJ|1|AA|C|2664
8CMJ|1|AA|U|2665
8CMJ|1|AA|C|2666
*
8CMJ|1|AA|G|2690
8CMJ|1|AA|A|2691
8CMJ|1|AA|A|2692
8CMJ|1|AA|C|2693
*
8CMJ|1|AA|G|2700
8CMJ|1|AA|U|2701
8CMJ|1|AA|A|2702
8CMJ|1|AA|A|2703
8CMJ|1|AA|A|2704
8CMJ|1|AA|A|2705
8CMJ|1|AA|G|2706

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain BB
5S ribosomal RNA; 5S rRNA
Chain F
60S ribosomal protein L21-A
Chain HH
60S ribosomal protein L5
Chain NN
60S ribosomal protein L11-A

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3105 s