J3_8CMJ_035

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CUC*GAAC*GUAAAAG

Length

14 nucleotides

Bulged bases

8CMJ|1|AA|A|2703, 8CMJ|1|AA|A|2705

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CMJ|1|AA|C|2664
8CMJ|1|AA|U|2665
8CMJ|1|AA|C|2666
*
8CMJ|1|AA|G|2690
8CMJ|1|AA|A|2691
8CMJ|1|AA|A|2692
8CMJ|1|AA|C|2693
*
8CMJ|1|AA|G|2700
8CMJ|1|AA|U|2701
8CMJ|1|AA|A|2702
8CMJ|1|AA|A|2703
8CMJ|1|AA|A|2704
8CMJ|1|AA|A|2705
8CMJ|1|AA|G|2706

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain F

60S ribosomal protein L21-A

Chain HH

60S ribosomal protein L5

Chain NN

60S ribosomal protein L11-A