J3_8CMJ_037

3D structure

PDB id

8CMJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.79 Å

Loop

Sequence

CCAUAU*AG*UG

Length

10 nucleotides

Bulged bases

8CMJ|1|BB|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CMJ_037 not in the Motif Atlas

Homologous match to J3_8C3A_059

Geometric discrepancy: 0.1184

The information below is about J3_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

8CMJ|1|BB|C|9
8CMJ|1|BB|C|10
8CMJ|1|BB|A|11
8CMJ|1|BB|U|12
8CMJ|1|BB|A|13
8CMJ|1|BB|U|14
*
8CMJ|1|BB|A|66
8CMJ|1|BB|G|67
*
8CMJ|1|BB|U|111
8CMJ|1|BB|G|112

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain F

60S ribosomal protein L21-A

Chain HH

60S ribosomal protein L5

Chain MM

60S ribosomal protein L10