J3_8CMJ_040
3D structure
- PDB id
- 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.79 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 8CMJ|1|c|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CMJ_040 not in the Motif Atlas
- Homologous match to J3_8P9A_071
- Geometric discrepancy: 0.2074
- The information below is about J3_8P9A_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.5
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8CMJ|1|c|U|633
8CMJ|1|c|G|634
8CMJ|1|c|A|635
*
8CMJ|1|c|U|861
8CMJ|1|c|A|862
8CMJ|1|c|A|863
8CMJ|1|c|U|864
8CMJ|1|c|A|865
*
8CMJ|1|c|U|965
8CMJ|1|c|A|966
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein S27-A
- Chain k
- 40S ribosomal protein S7-A
- Chain o
- 40S ribosomal protein S11-A
- Chain p
- 40S ribosomal protein S13
- Chain y
- 40S ribosomal protein S22-A
- Chain z
- 40S ribosomal protein S23-A
Coloring options: