Loop J3_8CMJ

3D structure

PDB id: 8CMJ (explore in PDB, NAKB, or RNA 3D Hub)
Description: Translocation intermediate 4 (TI-4*) of 80S S. cerevisiae ribosome with eEF2 in the absence of sordarin
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.79 Å

Loop

Sequence: CCAGACACAAUAAGGAUUG*CUUGAUUUUGUGGGUG*UUAGACG
Length: 42 nucleotides
Bulged bases: 8CMJ|1|c|A|1217, 8CMJ|1|c|A|1221, 8CMJ|1|c|A|1226, 8CMJ|1|c|A|1227, 8CMJ|1|c|G|1228, 8CMJ|1|c|U|1257, 8CMJ|1|c|G|1445, 8CMJ|1|c|C|1447
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8CMJ|1|c|C|1215
8CMJ|1|c|C|1216
8CMJ|1|c|A|1217
8CMJ|1|c|G|1218
8CMJ|1|c|A|1219
8CMJ|1|c|C|1220
8CMJ|1|c|A|1221
8CMJ|1|c|C|1222
8CMJ|1|c|A|1223
8CMJ|1|c|A|1224
8CMJ|1|c|U|1225
8CMJ|1|c|A|1226
8CMJ|1|c|A|1227
8CMJ|1|c|G|1228
8CMJ|1|c|G|1229
8CMJ|1|c|A|1230
8CMJ|1|c|U|1231
8CMJ|1|c|U|1232
8CMJ|1|c|G|1233
*
8CMJ|1|c|C|1252
8CMJ|1|c|U|1253
8CMJ|1|c|U|1254
8CMJ|1|c|G|1255
8CMJ|1|c|A|1256
8CMJ|1|c|U|1257
8CMJ|1|c|U|1258
8CMJ|1|c|U|1259
8CMJ|1|c|U|1260
8CMJ|1|c|G|1261
8CMJ|1|c|U|1262
8CMJ|1|c|G|1263
8CMJ|1|c|G|1264
8CMJ|1|c|G|1265
8CMJ|1|c|U|1266
8CMJ|1|c|G|1267
*
8CMJ|1|c|U|1442
8CMJ|1|c|U|1443
8CMJ|1|c|A|1444
8CMJ|1|c|G|1445
8CMJ|1|c|A|1446
8CMJ|1|c|C|1447
8CMJ|1|c|G|1448

Current chains

Chain c: 18S ribosomal RNA

Nearby chains

Chain 5: HLJ1_G0030400.mRNA.1.CDS.1
Chain 8: Ubiquitin-40S ribosomal protein S31
Chain Aa: Elongation factor 2
Chain n: 40S ribosomal protein S10-A

J3_8CMJ_043