J3_8CRE_005

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAAAAG*CG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8CRE|1|1|A|369
8CRE|1|1|U|370
8CRE|1|1|G|371
8CRE|1|1|A|372
8CRE|1|1|A|373
8CRE|1|1|A|374
8CRE|1|1|A|375
8CRE|1|1|G|376
*
8CRE|1|1|C|403
8CRE|1|1|G|404
*
8CRE|1|4|C|19
8CRE|1|4|U|20

Current chains

Chain 1

25S

Chain 4

5.8S

Nearby chains

Chain 9

Ribosomal protein L24

Chain AM

60S ribosomal protein L39

Chain l

60S ribosomal protein L4-B

Chain x

Ribosomal protein L22