J3_8CRE_013

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8CRE|1|1|A|1478

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8CRE|1|1|U|1475
8CRE|1|1|G|1476
8CRE|1|1|A|1477
8CRE|1|1|A|1478
8CRE|1|1|G|1479
8CRE|1|1|U|1480
8CRE|1|1|G|1481
*
8CRE|1|1|C|1853
8CRE|1|1|A|1854
8CRE|1|1|A|1855
*
8CRE|1|1|U|1867
8CRE|1|1|C|1868
8CRE|1|1|U|1869
8CRE|1|1|A|1870

Current chains

Chain 1

25S

Nearby chains

Chain AH

60S ribosomal protein L34-B

Chain z

60S ribosomal protein L19-A