J3_8CRE_032
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CRE_032 not in the Motif Atlas
- Geometric match to J3_8C3A_048
- Geometric discrepancy: 0.0738
- The information below is about J3_8C3A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
8CRE|1|AS|A|369
8CRE|1|AS|U|370
8CRE|1|AS|G|371
8CRE|1|AS|A|372
8CRE|1|AS|A|373
8CRE|1|AS|A|374
8CRE|1|AS|A|375
8CRE|1|AS|G|376
*
8CRE|1|AS|C|403
8CRE|1|AS|G|404
*
8CRE|1|AU|C|19
8CRE|1|AU|U|20
Current chains
- Chain AS
- 25S
- Chain AU
- 5.8S
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BK
- Ribosomal protein L22
- Chain BT
- Ribosomal protein L24
- Chain CG
- 60S ribosomal protein L39
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