J3_8CRE_038
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UU*AGAAG*CAAUUGA
- Length
- 14 nucleotides
- Bulged bases
- 8CRE|1|AS|A|1061, 8CRE|1|AS|U|1091
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CRE_038 not in the Motif Atlas
- Homologous match to J3_8C3A_051
- Geometric discrepancy: 0.066
- The information below is about J3_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CRE|1|AS|U|982
8CRE|1|AS|U|983
*
8CRE|1|AS|A|1058
8CRE|1|AS|G|1059
8CRE|1|AS|A|1060
8CRE|1|AS|A|1061
8CRE|1|AS|G|1062
*
8CRE|1|AS|C|1088
8CRE|1|AS|A|1089
8CRE|1|AS|A|1090
8CRE|1|AS|U|1091
8CRE|1|AS|U|1092
8CRE|1|AS|G|1093
8CRE|1|AS|A|1094
Current chains
- Chain AS
- 25S
Nearby chains
- Chain BB
- 60S ribosomal protein L7-A
- Chain BO
- 60S ribosomal protein L21-A
- Chain BW
- 60S ribosomal protein L29
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