J3_8CRE_039

3D structure

PDB id

8CRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CRE_039 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.331

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8CRE|1|AS|G|1226
8CRE|1|AS|A|1227
8CRE|1|AS|C|1228
*
8CRE|1|AS|G|1252
8CRE|1|AS|C|1253
8CRE|1|AS|U|1254
8CRE|1|AS|A|1255
8CRE|1|AS|A|1256
8CRE|1|AS|G|1257
8CRE|1|AS|G|1258
*
8CRE|1|AS|C|1273
8CRE|1|AS|A|1274
8CRE|1|AS|C|1275

Current chains

Chain AS

25S

Nearby chains

Chain p0

60S acidic ribosomal protein P0