3D structure

PDB id
8CRE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GAC*GCUAAGG*CAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CRE_039 not in the Motif Atlas
Homologous match to J3_8C3A_005
Geometric discrepancy: 0.331
The information below is about J3_8C3A_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_28621.3
Basepair signature
cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
7

Unit IDs

8CRE|1|AS|G|1226
8CRE|1|AS|A|1227
8CRE|1|AS|C|1228
*
8CRE|1|AS|G|1252
8CRE|1|AS|C|1253
8CRE|1|AS|U|1254
8CRE|1|AS|A|1255
8CRE|1|AS|A|1256
8CRE|1|AS|G|1257
8CRE|1|AS|G|1258
*
8CRE|1|AS|C|1273
8CRE|1|AS|A|1274
8CRE|1|AS|C|1275

Current chains

Chain AS
25S

Nearby chains

Chain p0
60S acidic ribosomal protein P0

Coloring options:


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