J3_8CRE_048
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 8CRE|1|AS|C|2732, 8CRE|1|AS|C|2769
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CRE_048 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0383
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8CRE|1|AS|G|2623
8CRE|1|AS|U|2624
8CRE|1|AS|C|2625
*
8CRE|1|AS|G|2726
8CRE|1|AS|C|2727
8CRE|1|AS|C|2728
8CRE|1|AS|U|2729
8CRE|1|AS|A|2730
8CRE|1|AS|U|2731
8CRE|1|AS|C|2732
8CRE|1|AS|G|2733
8CRE|1|AS|A|2734
8CRE|1|AS|U|2735
8CRE|1|AS|C|2736
8CRE|1|AS|C|2737
*
8CRE|1|AS|G|2765
8CRE|1|AS|G|2766
8CRE|1|AS|U|2767
8CRE|1|AS|G|2768
8CRE|1|AS|C|2769
8CRE|1|AS|C|2770
Current chains
- Chain AS
- 25S
Nearby chains
- Chain BL
- 60S ribosomal protein L18-A
- Chain BO
- 60S ribosomal protein L21-A
- Chain BV
- 60S ribosomal protein L28
- Chain CJ
- 60S ribosomal protein L42-B
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