J3_8CRE_056
3D structure
- PDB id
- 8CRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 8CRE|1|B|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CRE_056 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0475
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8CRE|1|B|A|41
8CRE|1|B|G|42
8CRE|1|B|A|43
8CRE|1|B|U|44
8CRE|1|B|U|45
8CRE|1|B|A|46
8CRE|1|B|A|47
8CRE|1|B|G|48
*
8CRE|1|B|C|429
8CRE|1|B|G|430
8CRE|1|B|C|431
8CRE|1|B|G|432
8CRE|1|B|C|433
8CRE|1|B|A|434
8CRE|1|B|A|435
8CRE|1|B|A|436
8CRE|1|B|U|437
*
8CRE|1|B|A|462
8CRE|1|B|G|463
8CRE|1|B|U|464
Current chains
- Chain B
- 18S
Nearby chains
- Chain L
- Ribosomal protein S4
- Chain Z
- Ribosomal protein S23 (S12)
Coloring options: