J3_8CRX_016

3D structure

PDB id

8CRX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8CRX|1|a|U|771, 8CRX|1|a|A|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CRX_016 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0768

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8CRX|1|a|U|768
8CRX|1|a|G|769
8CRX|1|a|A|770
8CRX|1|a|U|771
8CRX|1|a|C|772
8CRX|1|a|U|773
8CRX|1|a|A|774
*
8CRX|1|a|U|858
8CRX|1|a|A|859
8CRX|1|a|G|860
*
8CRX|1|a|C|876
8CRX|1|a|A|877
8CRX|1|a|A|878
8CRX|1|a|A|879

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2