J3_8CVJ_045

3D structure

PDB id

8CVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVJ_045 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0846

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

8CVJ|1|2a|C|936
8CVJ|1|2a|A|937
8CVJ|1|2a|A|938
8CVJ|1|2a|G|939
*
8CVJ|1|2a|C|1344
8CVJ|1|2a|U|1345
8CVJ|1|2a|A|1346
8CVJ|1|2a|G|1347
8CVJ|1|2a|U|1348
8CVJ|1|2a|A|1349
8CVJ|1|2a|A|1350
*
8CVJ|1|2a|U|1372
8CVJ|1|2a|G|1373
8CVJ|1|2a|A|1374
8CVJ|1|2a|A|1375
8CVJ|1|2a|U|1376
8CVJ|1|2a|A|1377
8CVJ|1|2a|C|1378
8CVJ|1|2a|G|1379

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2i

30S ribosomal protein S9

Chain 2y

Transfer RNA; tRNA