J3_8CVK_004

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

8CVK|1|1A|G|686, 8CVK|1|1A|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVK_004 not in the Motif Atlas

Homologous match to J3_9DFE_007

Geometric discrepancy: 0.0601

The information below is about J3_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8CVK|1|1A|C|683
8CVK|1|1A|G|684
8CVK|1|1A|A|685
8CVK|1|1A|G|686
8CVK|1|1A|C|687
8CVK|1|1A|U|688
8CVK|1|1A|A|689
*
8CVK|1|1A|U|773
8CVK|1|1A|A|774
8CVK|1|1A|G|775
*
8CVK|1|1A|C|791
8CVK|1|1A|G|792
8CVK|1|1A|A|793
8CVK|1|1A|G|794

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1D

50S ribosomal protein L2