J3_8CVK_009

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVK_009 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.0699

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8CVK|1|1A|G|1344
8CVK|1|1A|C|1345
8CVK|1|1A|G|1346
8CVK|1|1A|G|1347
8CVK|1|1A|G|1348
8CVK|1|1A|A|1349
8CVK|1|1A|C|1350
*
8CVK|1|1A|G|1381
8CVK|1|1A|G|1382
8CVK|1|1A|C|1383
8CVK|1|1A|A|1384
8CVK|1|1A|G|1385
*
8CVK|1|1A|C|1402
8CVK|1|1A|C|1403

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1X

50S ribosomal protein L23