J3_8CVK_039

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8CVK|1|2A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVK_039 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.0775

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8CVK|1|2A|C|2517
8CVK|1|2A|A|2518
8CVK|1|2A|U|2519
8CVK|1|2A|C|2520
*
8CVK|1|2A|G|2545
8CVK|1|2A|U|2546
8CVK|1|2A|U|2547
*
8CVK|1|2A|A|2561
8CVK|1|2A|U|2562
8CVK|1|2A|U|2563
8CVK|1|2A|A|2564
8CVK|1|2A|A|2565
8CVK|1|2A|A|2566
8CVK|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14