J3_8CVK_064

3D structure

PDB id

8CVK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8CVK|1|1a|U|1212, 8CVK|1|1a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVK_064 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1625

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

8CVK|1|1a|C|990
8CVK|1|1a|U|991
8CVK|1|1a|U|992
8CVK|1|1a|G|993
8CVK|1|1a|A|994
8CVK|1|1a|C|995
8CVK|1|1a|A|996
8CVK|1|1a|U|997
*
8CVK|1|1a|A|1044
8CVK|1|1a|C|1045
8CVK|1|1a|A|1046
8CVK|1|1a|G|1047
*
8CVK|1|1a|C|1210
8CVK|1|1a|U|1211
8CVK|1|1a|U|1212
8CVK|1|1a|A|1213
8CVK|1|1a|C|1214
8CVK|1|1a|G|1215

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1n

30S ribosomal protein S14 type Z