J3_8CVL_003
3D structure
- PDB id
- 8CVL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.3 Å
Loop
- Sequence
- UAAAC*GGGUCGUG*CG
- Length
- 15 nucleotides
- Bulged bases
- 8CVL|1|1A|U|272|||A
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CVL_003 not in the Motif Atlas
- Homologous match to J3_9DFE_005
- Geometric discrepancy: 0.1541
- The information below is about J3_9DFE_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97971.2
- Basepair signature
- cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CVL|1|1A|U|269
8CVL|1|1A|A|270
8CVL|1|1A|A|271
8CVL|1|1A|A|271|||A
8CVL|1|1A|C|271|||B
*
8CVL|1|1A|G|271|||V
8CVL|1|1A|G|271|||W
8CVL|1|1A|G|271|||X
8CVL|1|1A|U|271|||Y
8CVL|1|1A|C|271|||Z
8CVL|1|1A|G|272
8CVL|1|1A|U|272|||A
8CVL|1|1A|G|272|||B
*
8CVL|1|1A|C|366
8CVL|1|1A|G|370
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1I
- 50S ribosomal protein L9
Coloring options: