J3_8CVL_039

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

8CVL|1|2A|A|2518, 8CVL|1|2A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVL_039 not in the Motif Atlas

Homologous match to J3_8VTW_008

Geometric discrepancy: 0.0493

The information below is about J3_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.4

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

8CVL|1|2A|C|2517
8CVL|1|2A|A|2518
8CVL|1|2A|U|2519
8CVL|1|2A|C|2520
*
8CVL|1|2A|G|2545
8CVL|1|2A|U|2546
8CVL|1|2A|U|2547
*
8CVL|1|2A|A|2561
8CVL|1|2A|U|2562
8CVL|1|2A|U|2563
8CVL|1|2A|A|2564
8CVL|1|2A|A|2565
8CVL|1|2A|A|2566
8CVL|1|2A|G|2567

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2O

50S ribosomal protein L14