J3_8CVL_056

3D structure

PDB id

8CVL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

CUCG*CGAUAGCGCACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8CVL|1|1A|U|448, 8CVL|1|1A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVL_056 not in the Motif Atlas

Homologous match to J3_9DFE_003

Geometric discrepancy: 0.0583

The information below is about J3_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8CVL|1|1A|C|32
8CVL|1|1A|U|33
8CVL|1|1A|C|34
8CVL|1|1A|G|35
*
8CVL|1|1A|C|445
8CVL|1|1A|G|446
8CVL|1|1A|A|447
8CVL|1|1A|U|448
8CVL|1|1A|A|449
8CVL|1|1A|G|450
8CVL|1|1A|C|451
8CVL|1|1A|G|452
8CVL|1|1A|C|453
8CVL|1|1A|A|454
8CVL|1|1A|C|455
8CVL|1|1A|C|456
8CVL|1|1A|A|457
8CVL|1|1A|G|458
8CVL|1|1A|U|459
8CVL|1|1A|A|460
8CVL|1|1A|C|461
*
8CVL|1|1A|G|468
8CVL|1|1A|G|469
8CVL|1|1A|A|470
8CVL|1|1A|A|471
8CVL|1|1A|A|472
8CVL|1|1A|G|473

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1F

50S ribosomal protein L4

Chain 1U

50S ribosomal protein L20

Chain 1X

50S ribosomal protein L23