J3_8CVM_004

3D structure

PDB id

8CVM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cutibacterium acnes 50S ribosomal subunit with P-site tRNA and Sarecycline bound in the local refined map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UGAUCUA*UAG*CAAA

Length

14 nucleotides

Bulged bases

8CVM|1|a|U|771, 8CVM|1|a|A|877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CVM_004 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0768

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8CVM|1|a|U|768
8CVM|1|a|G|769
8CVM|1|a|A|770
8CVM|1|a|U|771
8CVM|1|a|C|772
8CVM|1|a|U|773
8CVM|1|a|A|774
*
8CVM|1|a|U|858
8CVM|1|a|A|859
8CVM|1|a|G|860
*
8CVM|1|a|C|876
8CVM|1|a|A|877
8CVM|1|a|A|878
8CVM|1|a|A|879

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2